Update R to version 4.1.0

- Update code-server to version 3.10.1
  - aka VS Code version 1.56.1
- Update JupyterHub to version 1.4.1
- verse: Update extension LaTeX Workshop to 8.18.0

geospatial/.gitlab-ci.yml

@@ -35,7 +35,7 @@
   variables:
     DOCKER_DRIVER: overlay2
     DOCKER_TLS_CERTDIR: "/certs"
-    R_VERSION_UPDATE: "false"
+    R_VERSION_UPDATE: "true"
   before_script:
     - *before-script-build
 

geospatial/latest.Dockerfile

-FROM registry.gitlab.b-data.ch/jupyterlab/r/verse:4.0.5
+FROM registry.gitlab.b-data.ch/jupyterlab/r/verse:4.1.0
 
 USER root
 

r-ver/latest.Dockerfile

-FROM registry.gitlab.b-data.ch/r/r-ver:4.0.5
+FROM registry.gitlab.b-data.ch/r/r-ver:4.1.0
 
 LABEL org.label-schema.license="MIT" \
       org.label-schema.vcs-url="https://gitlab.b-data.ch/jupyterlab/r/docker-stack" \
@@ -16,11 +16,11 @@ ARG PANDOC_VERSION
 ENV NB_USER=${NB_USER:-jovyan} \
     NB_UID=${NB_UID:-1000} \
     NB_GID=${NB_GID:-100} \
-    JUPYTERHUB_VERSION=${JUPYTERHUB_VERSION:-1.4.0} \
+    JUPYTERHUB_VERSION=${JUPYTERHUB_VERSION:-1.4.1} \
     JUPYTERLAB_VERSION=${JUPYTERLAB_VERSION:-3.0.15} \
-    CODE_SERVER_RELEASE=${CODE_SERVER_RELEASE:-3.10.0} \
+    CODE_SERVER_RELEASE=${CODE_SERVER_RELEASE:-3.10.1} \
     CODE_BUILTIN_EXTENSIONS_DIR=/opt/code-server/extensions \
-    PANDOC_VERSION=${PANDOC_VERSION:-2.10.1}
+    PANDOC_VERSION=${PANDOC_VERSION:-2.13}
 
 USER root
 
@@ -65,7 +65,7 @@ RUN apt-get update \
   && curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Bold%20Italic.ttf -o /usr/share/fonts/truetype/meslo/MesloLGS\ NF\ Bold\ Italic.ttf \
   && fc-cache -fv \
   ## Install pandoc
-  && curl -sLO https://dl.b-data.ch/pandoc/releases/${PANDOC_VERSION}/pandoc-${PANDOC_VERSION}-1-$(dpkg --print-architecture).deb \
+  && curl -sLO https://github.com/jgm/pandoc/releases/download/${PANDOC_VERSION}/pandoc-${PANDOC_VERSION}-1-$(dpkg --print-architecture).deb \
   && dpkg -i pandoc-${PANDOC_VERSION}-1-$(dpkg --print-architecture).deb \
   && rm pandoc-${PANDOC_VERSION}-1-$(dpkg --print-architecture).deb \
   ## configure git not to request password each time

tidyverse/.gitlab-ci.yml

@@ -35,7 +35,7 @@
   variables:
     DOCKER_DRIVER: overlay2
     DOCKER_TLS_CERTDIR: "/certs"
-    R_VERSION_UPDATE: "false"
+    R_VERSION_UPDATE: "true"
   before_script:
     - *before-script-build
 

tidyverse/latest.Dockerfile

-FROM registry.gitlab.b-data.ch/jupyterlab/r/r-ver:4.0.5
+FROM registry.gitlab.b-data.ch/jupyterlab/r/r-ver:4.1.0
 
 USER root
 

verse/.gitlab-ci.yml

@@ -35,7 +35,7 @@
   variables:
     DOCKER_DRIVER: overlay2
     DOCKER_TLS_CERTDIR: "/certs"
-    R_VERSION_UPDATE: "false"
+    R_VERSION_UPDATE: "true"
   before_script:
     - *before-script-build
 

verse/latest.Dockerfile

-FROM registry.gitlab.b-data.ch/jupyterlab/r/tidyverse:4.0.5
+FROM registry.gitlab.b-data.ch/jupyterlab/r/tidyverse:4.1.0
 
 ARG CTAN_REPO=${CTAN_REPO:-http://mirror.ctan.org/systems/texlive/tlnet}
 ENV CTAN_REPO=${CTAN_REPO}
@@ -91,8 +91,8 @@ RUN wget "https://travis-bin.yihui.name/texlive-local.deb" \
     blogdown bookdown rticles rmdshower rJava xaringan \
   ## Install code-server extensions
   && cd /tmp \
-  && curl -sLO https://open-vsx.org/api/James-Yu/latex-workshop/8.17.0/file/James-Yu.latex-workshop-8.17.0.vsix \
-  && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension James-Yu.latex-workshop-8.17.0.vsix \
+  && curl -sLO https://open-vsx.org/api/James-Yu/latex-workshop/8.18.0/file/James-Yu.latex-workshop-8.18.0.vsix \
+  && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension James-Yu.latex-workshop-8.18.0.vsix \
   ## Clean up
   && rm -rf /tmp/*