add missing Dockerfile

r-ver/3.3.3/Dockerfile

+FROM debian:jessie
+
+ARG R_VERSION
+ARG BUILD_DATE
+ENV BUILD_DATE ${BUILD_DATE:-2017-04-21}
+ENV R_VERSION ${R_VERSION:-3.3.3}
+ENV LC_ALL en_US.UTF-8
+ENV LANG en_US.UTF-8
+ENV TERM xterm
+
+## dependencies
+RUN apt-get update \
+  && apt-get install -y --no-install-recommends \
+    bash-completion \
+    ca-certificates \
+    file \
+    fonts-texgyre \
+    g++ \
+    gfortran \
+    gsfonts \
+    libbz2-1.0 \
+    libcurl3 \
+    libicu52 \
+    libjpeg62-turbo \
+    libopenblas-dev \
+    libpangocairo-1.0-0 \
+    libpcre3 \
+    libpng12-0 \
+    libtiff5 \
+    liblzma5 \
+    locales \
+    make \
+    unzip \
+    zip \
+    zlib1g \
+  && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
+  && locale-gen en_US.utf8 \
+  && /usr/sbin/update-locale LANG=en_US.UTF-8 \
+  && BUILDDEPS="curl \
+    default-jdk \
+    libbz2-dev \
+    libcairo2-dev \
+    libcurl4-openssl-dev \
+    libpango1.0-dev \
+    libjpeg-dev \
+    libicu-dev \
+    libpcre3-dev \
+    libpng-dev \
+    libreadline-dev \
+    libtiff5-dev \
+    liblzma-dev \
+    libx11-dev \
+    libxt-dev \
+    perl \
+    tcl8.5-dev \
+    tk8.5-dev \
+    texinfo \
+    texlive-extra-utils \
+    texlive-fonts-recommended \
+    texlive-fonts-extra \
+    texlive-latex-recommended \
+    x11proto-core-dev \
+    xauth \
+    xfonts-base \
+    xvfb \
+    zlib1g-dev" \
+  && apt-get install -y --no-install-recommends $BUILDDEPS \
+  && cd tmp/ \
+  ## Download source code
+  && curl -O https://cran.r-project.org/src/base/R-3/R-${R_VERSION}.tar.gz \
+  ## Extract source code
+  && tar -xf R-${R_VERSION}.tar.gz \
+  && cd R-${R_VERSION} \
+  ## Set compiler flags
+  && R_PAPERSIZE=letter \
+    R_BATCHSAVE="--no-save --no-restore" \
+    R_BROWSER=xdg-open \
+    PAGER=/usr/bin/pager \
+    PERL=/usr/bin/perl \
+    R_UNZIPCMD=/usr/bin/unzip \
+    R_ZIPCMD=/usr/bin/zip \
+    R_PRINTCMD=/usr/bin/lpr \
+    LIBnn=lib \
+    AWK=/usr/bin/awk \
+    CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \
+    CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \
+  ## Configure options
+  ./configure --enable-R-shlib \
+               --enable-memory-profiling \
+               --with-readline \
+               --with-blas="-lopenblas" \
+               --disable-nls \
+               --without-recommended-packages \
+  ## Build and install
+  && make \
+  && make install \
+  ## Add a default CRAN mirror
+  && echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
+  ## Add a library directory (for user-installed packages)
+  && mkdir -p /usr/local/lib/R/site-library \
+  && chown root:staff /usr/local/lib/R/site-library \
+  && chmod g+wx /usr/local/lib/R/site-library \
+  ## Fix library path
+  && echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
+  && echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
+  ## install packages from date-locked MRAN snapshot of CRAN
+  && [ -z "$BUILD_DATE" ] && BUILD_DATE=$(TZ="America/Los_Angeles" date -I) || true \
+  && MRAN=https://mran.microsoft.com/snapshot/${BUILD_DATE} \
+  && echo MRAN=$MRAN >> /etc/environment \
+  && export MRAN=$MRAN \
+  && echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
+  ## Use littler installation scripts
+  && Rscript -e "install.packages(c('littler', 'docopt'), repo = '$MRAN')" \
+  && ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
+  && ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
+  && ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \
+  ## Clean up from R source install
+  && cd / \
+  && rm -rf /tmp/* \
+  && apt-get remove --purge -y $BUILDDEPS \
+  && apt-get autoremove -y \
+  && apt-get autoclean -y \
+  && rm -rf /var/lib/apt/lists/*
+
+CMD ["R"]
+

verse/Dockerfile

@@ -4,13 +4,21 @@ MAINTAINER "Carl Boettiger" cboettig@ropensci.org
 ## Add LaTeX, rticles and bookdown support
 RUN apt-get update \
   && apt-get install -y --no-install-recommends \
+    ## for rJava
+    default-jdk \
+    ## used by some base R plots
     ghostscript \
-    imagemagick \
-    ## system dependency of hadley/pkgdown
-    libmagick++-dev \
+    ## used to build rJava and other packages
+    libbz2-dev \
+    libicu-dev \
+    liblzma-dev \
     ## system dependency of hunspell (devtools)
     libhunspell-dev \
-    ## R CMD Check wants qpdf to check pdf sizes, or iy throws a Warning 
+    ## system dependency of hadley/pkgdown
+    libmagick++-dev \
+    ## for V8-based javascript wrappers
+    libv8-dev \
+    ## R CMD Check wants qpdf to check pdf sizes, or throws a Warning 
     qpdf \
     ## for git via ssh key 
     ssh \
@@ -41,10 +49,6 @@ RUN apt-get update \
 ## Consider including: 
 # - libv8-dev (Javascript V8 packages)
 # - yihui/printr R package (when released to CRAN)
-# - jekyll ruby-rouge (servr R package, Jekyll)
 # - jags 4.2 (build from source, repo version too old and apt-tagging forces upgrade of all compiler libs)
-# - libgdal-dev libproj-dev libgeos-dev (for rgdal and related geo deps)
 # - libgsl0-dev (GSL math library dependencies)
-# - liblzma-dev libbz2-dev libiuc-dev (dev libraries needed to build R, also used to build littler & rJava)
-# - default-jdk needed for rJava
-
+# - librdf ?