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FROM registry.gitlab.b-data.ch/rocker/verse:4.1.2
ARG NCPUS=1
ARG DEBIAN_FRONTEND=noninteractive
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
gdal-bin \
libfftw3-dev \
libgdal-dev \
libgeos-dev \
libgsl0-dev \
libhdf4-alt-dev \
libhdf5-dev \
libjq-dev \
libproj-dev \
libprotobuf-dev \
libnetcdf-dev \
libudunits2-dev \
netcdf-bin \
postgis \
protobuf-compiler \
sqlite3 \
tk-dev \
unixodbc-dev \
&& install2.r --error --skipinstalled -n $NCPUS \
RColorBrewer \
RandomFields \
RNetCDF \
classInt \
deldir \
gstat \
hdf5r \
lidR \
mapdata \
maptools \
mapview \
ncdf4 \
proj4 \
raster \
rgdal \
rgeos \
rlas \
sf \
sp \
spacetime \
spatstat \
spatialreg \
spdep \
stars \
terra \
tidync \
tmap \
geoR \
geosphere \
## from bioconductor
&& R -e "BiocManager::install('rhdf5', update = FALSE, ask = FALSE)" \
## Clean up
&& rm -rf /tmp/* \
&& rm -rf /var/lib/apt/lists/*
## Install wgrib2 for NOAA's NOMADS / rNOMADS forecast files
#RUN cd /opt \
# && wget https://www.ftp.cpc.ncep.noaa.gov/wd51we/wgrib2/wgrib2.tgz \
# && tar -xvf wgrib2.tgz \
# && rm -rf wgrib2.tgz \
# && cd grib2 \
# && CC=gcc FC=gfortran make \
# && ln -s /opt/grib2/wgrib2/wgrib2 /usr/local/bin/wgrib2