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ARG R_VERSION=4.2.0
FROM registry.gitlab.b-data.ch/rocker/rstudio:${R_VERSION}
ARG NCPUS=1
ARG DEBIAN_FRONTEND=noninteractive
RUN apt-get update \
&& apt-get -y --no-install-recommends install \
cmake \
libxml2-dev \
libcairo2-dev \
libsqlite3-dev \
libmariadb-dev \
libssh2-1-dev \
unixodbc-dev \
libsasl2-dev \
libtiff-dev \
libharfbuzz-dev \
libfribidi-dev \
libgit2-dev \
libxtst6 \
&& install2.r --error -n $NCPUS BiocManager \
&& install2.r --error --deps TRUE --skipinstalled -n $NCPUS \
tidyverse \
dplyr \
devtools \
formatR \
## dplyr database backends
&& install2.r --error --skipinstalled -n $NCPUS \
arrow \
duckdb \
fst \
## Clean up
&& rm -rf /tmp/* \
&& rm -rf /var/lib/apt/lists/*