Skip to content
Snippets Groups Projects
Commit af6acb33 authored by Carl Boettiger's avatar Carl Boettiger
Browse files

include bioc installer

parent 447af582
No related branches found
No related tags found
No related merge requests found
......@@ -11,6 +11,10 @@ RUN apt-get update -qq && apt-get -y --no-install-recommends install \
## install these packages from date-locked MRAN snapshot of CRAN
&& [ -z "$BUILD_DATE" ] && BUILD_DATE=$(date -I --date='TZ="America/Los_Angeles"') || true \
&& wget https://raw.githubusercontent.com/rocker-org/rocker-versioned/master/tidyverse/install.r -O /usr/local/bin/install.r \
&& chmod +x /usr/local/bin/install.r \
## devtools dependency not on CRAN:
&& export REPOS=http://www.bioconductor.org/packages/release/bioc \
&& install.r BiocInstaller \
&& export REPOS=https://mran.microsoft.com/snapshot/$BUILD_DATE \
&& install.r RSQLite RMySQL RPostgreSQL \
&& export INCLUDE_SUGGESTS="TRUE" \
......
......@@ -10,9 +10,10 @@ RUN apt-get update -qq && apt-get -y --no-install-recommends install \
## install these packages from date-locked MRAN snapshot of CRAN
&& [ -z "$BUILD_DATE" ] && BUILD_DATE=$(date -I --date='TZ="America/Los_Angeles"') || true \
&& wget https://raw.githubusercontent.com/rocker-org/rocker-versioned/master/tidyverse/install.r -O /usr/local/bin/install.r \
&& chmod +x /usr/local/bin/install.r \
## devtools dependency not on CRAN:
&& export REPOS=http://www.bioconductor.org/packages/release/bioc \
&& install.r BiocInstaller \
&& install.r BiocInstaller \
&& export REPOS=https://mran.microsoft.com/snapshot/$BUILD_DATE \
&& install.r RSQLite RMySQL RPostgreSQL \
&& export INCLUDE_SUGGESTS="TRUE" \
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment