pin 3.6.3

r-ver/devel.Dockerfile

-FROM debian:buster
-
-LABEL org.label-schema.license="GPL-2.0" \
-      org.label-schema.vcs-url="https://github.com/rocker-org/rocker-versioned" \
-      org.label-schema.vendor="Rocker Project" \
-      maintainer="Carl Boettiger <cboettig@ropensci.org>"
-
-ARG BUILD_DATE
-ENV LC_ALL=en_US.UTF-8 \
-    LANG=en_US.UTF-8 \
-    TERM=xterm
-
-## ccache can speed compiling later on, but including by default can increase image sizes greatly
-#    PATH=/usr/lib/ccache:$PATH
-
-RUN apt-get update \
-  && apt-get install -y --no-install-recommends \
-    bash-completion \
-    ca-certificates \
-    ccache \
-    devscripts \
-    file \
-    fonts-texgyre \
-    g++ \
-    gfortran \
-    gsfonts \
-    libblas-dev \
-    libbz2-1.0 \
-    libcurl4 \
-    libicu63 \
-    libpcre2-8-0 \
-    libjpeg62-turbo \
-    libopenblas-dev \
-    libpangocairo-1.0-0 \
-    libpng16-16 \
-    libreadline7 \
-    libtiff5 \
-    liblzma5 \
-    locales \
-    make \
-    unzip \
-    zip \
-    zlib1g \
-  && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
-  && locale-gen en_US.utf8 \
-  && /usr/sbin/update-locale LANG=en_US.UTF-8 \
-  && BUILDDEPS="curl \
-    default-jdk \
-    libbz2-dev \
-    libcairo2-dev \
-    libcurl4-openssl-dev \
-    libpango1.0-dev \
-    libjpeg-dev \
-    libicu-dev \
-    libpcre2-dev \
-    libpng-dev \
-    libreadline-dev \
-    libtiff5-dev \
-    liblzma-dev \
-    libx11-dev \
-    libxt-dev \
-    perl \
-    rsync \
-    subversion \
-    tcl8.6-dev \
-    tk8.6-dev \
-    texinfo \
-    texlive-extra-utils \
-    texlive-fonts-recommended \
-    texlive-fonts-extra \
-    texlive-latex-recommended \
-    x11proto-core-dev \
-    xauth \
-    xfonts-base \
-    xvfb \
-    zlib1g-dev" \
-  && apt-get install -y --no-install-recommends $BUILDDEPS \
-  && cd tmp/ \
-  ## Download source code
-  && svn co https://svn.r-project.org/R/trunk R-devel \
-  ## Extract source code
-
-  && cd R-devel \
-  ## Get source code of recommended packages
-  && ./tools/rsync-recommended \
-  ## Set compiler flags
-  && R_PAPERSIZE=letter \
-    R_BATCHSAVE="--no-save --no-restore" \
-    R_BROWSER=xdg-open \
-    PAGER=/usr/bin/pager \
-    PERL=/usr/bin/perl \
-    R_UNZIPCMD=/usr/bin/unzip \
-    R_ZIPCMD=/usr/bin/zip \
-    R_PRINTCMD=/usr/bin/lpr \
-    LIBnn=lib \
-    AWK=/usr/bin/awk \
-    CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \
-    CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \
-  ## Configure options
-  ./configure --enable-R-shlib \
-               --enable-memory-profiling \
-               --with-readline \
-               --with-blas \
-               --with-tcltk \
-               --disable-nls \
-               --with-recommended-packages \
-  ## Build and install
-  && make \
-  && make install \
-  ## Add a default CRAN mirror
-  && echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
-  ## Add a library directory (for user-installed packages)
-  && mkdir -p /usr/local/lib/R/site-library \
-  && chown root:staff /usr/local/lib/R/site-library \
-  && chmod g+ws /usr/local/lib/R/site-library \
-  ## Fix library path
-  && echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
-  && echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
-  ## install packages from date-locked MRAN snapshot of CRAN
-  && [ -z "$BUILD_DATE" ] && BUILD_DATE=$(TZ="America/Los_Angeles" date -I) || true \
-  && MRAN=https://mran.microsoft.com/snapshot/${BUILD_DATE} \
-  && echo MRAN=$MRAN >> /etc/environment \
-  && export MRAN=$MRAN \
-  ## MRAN becomes default only in versioned images
-  ## Use littler installation scripts
-  && Rscript -e "install.packages(c('littler', 'docopt'), repo = '$MRAN')" \
-  && ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
-  && ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
-  && ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \
-  ## Clean up from R source install
-  && cd / \
-  && rm -rf /tmp/* \
-  && apt-get remove --purge -y $BUILDDEPS \
-  && apt-get autoremove -y \
-  && apt-get autoclean -y \
-  && rm -rf /var/lib/apt/lists/*
-#  && ccache -C
-CMD ["R"]
-

r-ver/hooks/post_push

-#!/bin/bash
-set -e
-
-if [ "$DOCKERFILE_PATH" == "latest.Dockerfile" ];
-then
-## Not all bash commands are available. notably grep -o -e options fail!!
-VERSION=`sed -n 's|.*R_VERSION:-\([0-9]\.[0-9]\.[0-9]\).*|\1|p' latest.Dockerfile`
-echo "Version being built is: $VERSION"
-
-echo "tagging $IMAGE_NAME as $DOCKER_REPO:$VERSION..."
-docker tag $IMAGE_NAME $DOCKER_REPO:$VERSION
-
-echo "pushing $DOCKER_REPO:$VERSION to hub..."
-docker push $DOCKER_REPO:$VERSION
-
-fi
-
-# docker tag $IMAGE_NAME $DOCKER_REPO:$SOURCE_BRANCH
-# docker push $DOCKER_REPO:$SOURCE_BRANCH
-
-

r-ver/latest.Dockerfile

-FROM debian:buster
-
-LABEL org.label-schema.license="GPL-2.0" \
-      org.label-schema.vcs-url="https://github.com/rocker-org/rocker-versioned" \
-      org.label-schema.vendor="Rocker Project" \
-      maintainer="Carl Boettiger <cboettig@ropensci.org>"
-
-ARG R_VERSION
-ARG BUILD_DATE
-ARG CRAN
-## Setting a BUILD_DATE will set CRAN to the matching MRAN date
-## No BUILD_DATE means that CRAN will default to latest 
-ENV R_VERSION=${R_VERSION:-3.6.3} \
-    CRAN=${CRAN:-https://cran.rstudio.com} \ 
-    LC_ALL=en_US.UTF-8 \
-    LANG=en_US.UTF-8 \
-    TERM=xterm
-  
-
-RUN apt-get update \
-  && apt-get install -y --no-install-recommends \
-    bash-completion \
-    ca-certificates \
-    file \
-    fonts-texgyre \
-    g++ \
-    gfortran \
-    gsfonts \
-    libblas-dev \
-    libbz2-1.0 \
-    libcurl4 \
-    libicu63 \
-    libjpeg62-turbo \
-    libopenblas-dev \
-    libpangocairo-1.0-0 \
-    libpcre3 \
-    libpng16-16 \
-    libreadline7 \
-    libtiff5 \
-    liblzma5 \
-    locales \
-    make \
-    unzip \
-    zip \
-    zlib1g \
-  && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
-  && locale-gen en_US.utf8 \
-  && /usr/sbin/update-locale LANG=en_US.UTF-8 \
-  && BUILDDEPS="curl \
-    default-jdk \
-    libbz2-dev \
-    libcairo2-dev \
-    libcurl4-openssl-dev \
-    libpango1.0-dev \
-    libjpeg-dev \
-    libicu-dev \
-    libpcre3-dev \
-    libpng-dev \
-    libreadline-dev \
-    libtiff5-dev \
-    liblzma-dev \
-    libx11-dev \
-    libxt-dev \
-    perl \
-    tcl8.6-dev \
-    tk8.6-dev \
-    texinfo \
-    texlive-extra-utils \
-    texlive-fonts-recommended \
-    texlive-fonts-extra \
-    texlive-latex-recommended \
-    x11proto-core-dev \
-    xauth \
-    xfonts-base \
-    xvfb \
-    zlib1g-dev" \
-  && apt-get install -y --no-install-recommends $BUILDDEPS \
-  && cd tmp/ \
-  ## Download source code
-  && curl -O https://cran.r-project.org/src/base/R-3/R-${R_VERSION}.tar.gz \
-  ## Extract source code
-  && tar -xf R-${R_VERSION}.tar.gz \
-  && cd R-${R_VERSION} \
-  ## Set compiler flags
-  && R_PAPERSIZE=letter \
-    R_BATCHSAVE="--no-save --no-restore" \
-    R_BROWSER=xdg-open \
-    PAGER=/usr/bin/pager \
-    PERL=/usr/bin/perl \
-    R_UNZIPCMD=/usr/bin/unzip \
-    R_ZIPCMD=/usr/bin/zip \
-    R_PRINTCMD=/usr/bin/lpr \
-    LIBnn=lib \
-    AWK=/usr/bin/awk \
-    CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \
-    CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \
-  ## Configure options
-  ./configure --enable-R-shlib \
-               --enable-memory-profiling \
-               --with-readline \
-               --with-blas \
-               --with-tcltk \
-               --disable-nls \
-               --with-recommended-packages \
-  ## Build and install
-  && make \
-  && make install \
-  ## Add a library directory (for user-installed packages)
-  && mkdir -p /usr/local/lib/R/site-library \
-  && chown root:staff /usr/local/lib/R/site-library \
-  && chmod g+ws /usr/local/lib/R/site-library \
-  ## Fix library path
-  && sed -i '/^R_LIBS_USER=.*$/d' /usr/local/lib/R/etc/Renviron \
-  && echo "R_LIBS_USER=\${R_LIBS_USER-'/usr/local/lib/R/site-library'}" >> /usr/local/lib/R/etc/Renviron \
-  && echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
-  ## Set configured CRAN mirror
-  && if [ -z "$BUILD_DATE" ]; then MRAN=$CRAN; \
-   else MRAN=https://mran.microsoft.com/snapshot/${BUILD_DATE}; fi \
-   && echo MRAN=$MRAN >> /etc/environment \
-  && echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
-  ## Use littler installation scripts
-  && Rscript -e "install.packages(c('littler', 'docopt'), repo = '$CRAN')" \
-  && ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
-  && ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
-  && ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \
-  ## Clean up from R source install
-  && cd / \
-  && rm -rf /tmp/* \
-  && apt-get remove --purge -y $BUILDDEPS \
-  && apt-get autoremove -y \
-  && apt-get autoclean -y \
-  && rm -rf /var/lib/apt/lists/*
-
-CMD ["R"]
-

rstudio/README.md

+**Note**: See the rocker-org/rocker-versioned2 repo for Dockerfile recipes for R >= 4.0.0
+
+
+
 # Using the rocker/rstudio container
 
 ## Quickstart

rstudio/devel.Dockerfile

-FROM rocker/r-ver:devel
-
-ARG RSTUDIO_VERSION
-#ENV RSTUDIO_VERSION=${RSTUDIO_VERSION:-1.1.463}
-ARG S6_VERSION
-ARG PANDOC_TEMPLATES_VERSION
-ENV S6_VERSION=${S6_VERSION:-v1.21.7.0}
-ENV S6_BEHAVIOUR_IF_STAGE2_FAILS=2
-ENV PATH=/usr/lib/rstudio-server/bin:$PATH
-ENV PANDOC_TEMPLATES_VERSION=${PANDOC_TEMPLATES_VERSION:-2.6}
-
-## Download and install RStudio server & dependencies
-## Attempts to get detect latest version, otherwise falls back to version given in $VER
-## Symlink pandoc, pandoc-citeproc so they are available system-wide
-RUN apt-get update \
-  && apt-get install -y --no-install-recommends \
-    file \
-    git \
-    libapparmor1 \
-    libclang-dev \
-    libcurl4-openssl-dev \
-    libedit2 \
-    libssl-dev \
-    lsb-release \
-    multiarch-support \
-    psmisc \
-    procps \
-    python-setuptools \
-    sudo \
-    wget \
-  && if [ -z "$RSTUDIO_VERSION" ]; \
-    then RSTUDIO_URL="https://www.rstudio.org/download/latest/stable/server/bionic/rstudio-server-latest-amd64.deb"; \
-    else RSTUDIO_URL="https://download2.rstudio.org/server/bionic/amd64/rstudio-server-${RSTUDIO_VERSION}-amd64.deb"; fi \
-  && wget -q $RSTUDIO_URL \
-  && dpkg -i rstudio-server-*-amd64.deb \
-  && rm rstudio-server-*-amd64.deb \
-  ## Symlink pandoc & standard pandoc templates for use system-wide
-  && ln -s /usr/lib/rstudio-server/bin/pandoc/pandoc /usr/local/bin \
-  && ln -s /usr/lib/rstudio-server/bin/pandoc/pandoc-citeproc /usr/local/bin \
-  && git clone --recursive --branch ${PANDOC_TEMPLATES_VERSION} https://github.com/jgm/pandoc-templates \
-  && mkdir -p /opt/pandoc/templates \
-  && cp -r pandoc-templates*/* /opt/pandoc/templates && rm -rf pandoc-templates* \
-  && mkdir /root/.pandoc && ln -s /opt/pandoc/templates /root/.pandoc/templates \
-  && apt-get clean \
-  && rm -rf /var/lib/apt/lists/ \
-  ## RStudio wants an /etc/R, will populate from $R_HOME/etc
-  && mkdir -p /etc/R \
-  ## Write config files in $R_HOME/etc
-  && echo '\n\
-    \n# Configure httr to perform out-of-band authentication if HTTR_LOCALHOST \
-    \n# is not set since a redirect to localhost may not work depending upon \
-    \n# where this Docker container is running. \
-    \nif(is.na(Sys.getenv("HTTR_LOCALHOST", unset=NA))) { \
-    \n  options(httr_oob_default = TRUE) \
-    \n}' >> /usr/local/lib/R/etc/Rprofile.site \
-  && echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron \
-  ## Need to configure non-root user for RStudio
-  && useradd rstudio \
-  && echo "rstudio:rstudio" | chpasswd \
-	&& mkdir /home/rstudio \
-	&& chown rstudio:rstudio /home/rstudio \
-	&& addgroup rstudio staff \
-  ## Prevent rstudio from deciding to use /usr/bin/R if a user apt-get installs a package
-  &&  echo 'rsession-which-r=/usr/local/bin/R' >> /etc/rstudio/rserver.conf \
-  ## use more robust file locking to avoid errors when using shared volumes:
-  && echo 'lock-type=advisory' >> /etc/rstudio/file-locks \
-  ## configure git not to request password each time
-  && git config --system credential.helper 'cache --timeout=3600' \
-  && git config --system push.default simple \
-  ## Set up S6 init system
-  && wget -P /tmp/ https://github.com/just-containers/s6-overlay/releases/download/${S6_VERSION}/s6-overlay-amd64.tar.gz \
-  && tar xzf /tmp/s6-overlay-amd64.tar.gz -C / \
-  && mkdir -p /etc/services.d/rstudio \
-  && echo '#!/usr/bin/with-contenv bash \
-          \n## load /etc/environment vars first: \
-  		  \n for line in $( cat /etc/environment ) ; do export $line ; done \
-          \n exec /usr/lib/rstudio-server/bin/rserver --server-daemonize 0' \
-          > /etc/services.d/rstudio/run \
-  && echo '#!/bin/bash \
-          \n rstudio-server stop' \
-          > /etc/services.d/rstudio/finish \
-  && mkdir -p /home/rstudio/.rstudio/monitored/user-settings \
-  && echo 'alwaysSaveHistory="0" \
-          \nloadRData="0" \
-          \nsaveAction="0"' \
-          > /home/rstudio/.rstudio/monitored/user-settings/user-settings \
-  && chown -R rstudio:rstudio /home/rstudio/.rstudio
-
-COPY userconf.sh /etc/cont-init.d/userconf
-
-## running with "-e ADD=shiny" adds shiny server
-COPY add_shiny.sh /etc/cont-init.d/add
-COPY disable_auth_rserver.conf /etc/rstudio/disable_auth_rserver.conf
-COPY pam-helper.sh /usr/lib/rstudio-server/bin/pam-helper
-
-EXPOSE 8787
-
-## automatically link a shared volume for kitematic users
-VOLUME /home/rstudio/kitematic
-
-CMD ["/init"]

rstudio/latest.Dockerfile

-FROM rocker/r-ver:3.6.3
-
-ARG RSTUDIO_VERSION
-#ENV RSTUDIO_VERSION=${RSTUDIO_VERSION:-1.2.5033}
-ARG S6_VERSION
-ARG PANDOC_TEMPLATES_VERSION
-ENV S6_VERSION=${S6_VERSION:-v1.21.7.0}
-ENV S6_BEHAVIOUR_IF_STAGE2_FAILS=2
-ENV PATH=/usr/lib/rstudio-server/bin:$PATH
-ENV PANDOC_TEMPLATES_VERSION=${PANDOC_TEMPLATES_VERSION:-2.9}
-
-## Download and install RStudio server & dependencies
-## Attempts to get detect latest version, otherwise falls back to version given in $VER
-## Symlink pandoc, pandoc-citeproc so they are available system-wide
-RUN apt-get update \
-  && apt-get install -y --no-install-recommends \
-    file \
-    git \
-    libapparmor1 \
-    libclang-dev \
-    libcurl4-openssl-dev \
-    libedit2 \
-    libssl-dev \
-    lsb-release \
-    multiarch-support \
-    psmisc \
-    procps \
-    python-setuptools \
-    sudo \
-    wget \
-  && if [ -z "$RSTUDIO_VERSION" ]; \
-    then RSTUDIO_URL="https://www.rstudio.org/download/latest/stable/server/bionic/rstudio-server-latest-amd64.deb"; \
-    else RSTUDIO_URL="http://download2.rstudio.org/server/bionic/amd64/rstudio-server-${RSTUDIO_VERSION}-amd64.deb"; fi \
-  && wget -q $RSTUDIO_URL \
-  && dpkg -i rstudio-server-*-amd64.deb \
-  && rm rstudio-server-*-amd64.deb \
-  ## Symlink pandoc & standard pandoc templates for use system-wide
-  && ln -s /usr/lib/rstudio-server/bin/pandoc/pandoc /usr/local/bin \
-  && ln -s /usr/lib/rstudio-server/bin/pandoc/pandoc-citeproc /usr/local/bin \
-  && git clone --recursive --branch ${PANDOC_TEMPLATES_VERSION} https://github.com/jgm/pandoc-templates \
-  && mkdir -p /opt/pandoc/templates \
-  && cp -r pandoc-templates*/* /opt/pandoc/templates && rm -rf pandoc-templates* \
-  && mkdir /root/.pandoc && ln -s /opt/pandoc/templates /root/.pandoc/templates \
-  && apt-get clean \
-  && rm -rf /var/lib/apt/lists/ \
-  ## RStudio wants an /etc/R, will populate from $R_HOME/etc
-  && mkdir -p /etc/R \
-  ## Write config files in $R_HOME/etc
-  && echo '\n\
-    \n# Configure httr to perform out-of-band authentication if HTTR_LOCALHOST \
-    \n# is not set since a redirect to localhost may not work depending upon \
-    \n# where this Docker container is running. \
-    \nif(is.na(Sys.getenv("HTTR_LOCALHOST", unset=NA))) { \
-    \n  options(httr_oob_default = TRUE) \
-    \n}' >> /usr/local/lib/R/etc/Rprofile.site \
-  && echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron \
-  ## Need to configure non-root user for RStudio
-  && useradd rstudio \
-  && echo "rstudio:rstudio" | chpasswd \
-	&& mkdir /home/rstudio \
-	&& chown rstudio:rstudio /home/rstudio \
-	&& addgroup rstudio staff \
-  ## Prevent rstudio from deciding to use /usr/bin/R if a user apt-get installs a package
-  &&  echo 'rsession-which-r=/usr/local/bin/R' >> /etc/rstudio/rserver.conf \
-  ## use more robust file locking to avoid errors when using shared volumes:
-  && echo 'lock-type=advisory' >> /etc/rstudio/file-locks \
-  ## configure git not to request password each time
-  && git config --system credential.helper 'cache --timeout=3600' \
-  && git config --system push.default simple \
-  ## Set up S6 init system
-  && wget -P /tmp/ https://github.com/just-containers/s6-overlay/releases/download/${S6_VERSION}/s6-overlay-amd64.tar.gz \
-  && tar xzf /tmp/s6-overlay-amd64.tar.gz -C / \
-  && mkdir -p /etc/services.d/rstudio \
-  && echo '#!/usr/bin/with-contenv bash \
-          \n## load /etc/environment vars first: \
-  		  \n for line in $( cat /etc/environment ) ; do export $line ; done \
-          \n exec /usr/lib/rstudio-server/bin/rserver --server-daemonize 0' \
-          > /etc/services.d/rstudio/run \
-  && echo '#!/bin/bash \
-          \n rstudio-server stop' \
-          > /etc/services.d/rstudio/finish \
-  && mkdir -p /home/rstudio/.rstudio/monitored/user-settings \
-  && echo 'alwaysSaveHistory="0" \
-          \nloadRData="0" \
-          \nsaveAction="0"' \
-          > /home/rstudio/.rstudio/monitored/user-settings/user-settings \
-  && chown -R rstudio:rstudio /home/rstudio/.rstudio
-
-COPY userconf.sh /etc/cont-init.d/userconf
-
-## running with "-e ADD=shiny" adds shiny server
-COPY add_shiny.sh /etc/cont-init.d/add
-COPY disable_auth_rserver.conf /etc/rstudio/disable_auth_rserver.conf
-COPY pam-helper.sh /usr/lib/rstudio-server/bin/pam-helper
-
-EXPOSE 8787
-
-## automatically link a shared volume for kitematic users
-VOLUME /home/rstudio/kitematic
-
-CMD ["/init"]

tidyverse/devel.Dockerfile

-FROM rocker/rstudio:devel
-
-RUN apt-get update -qq && apt-get -y --no-install-recommends install \
-  libxml2-dev \
-  libcairo2-dev \
-  libsqlite-dev \
-  libmariadbd-dev \
-  libmariadbclient-dev \
-  libpq-dev \
-  libssh2-1-dev \
-  unixodbc-dev \
-  libsasl2-dev \
-  && install2.r --error \
-    --deps TRUE \
-    tidyverse \
-    dplyr \
-    devtools \
-    formatR \
-    remotes \
-    selectr \
-    BiocManager
-
-## Notes: Above install2.r uses --deps TRUE to get Suggests dependencies as well,
-## dplyr and ggplot are already part of tidyverse, but listed explicitly to get their (many) suggested dependencies.
-## In addition to the the title 'tidyverse' packages, devtools is included for package development.
-## RStudio wants formatR for rmarkdown, even though it's not suggested.
-## remotes included for installation from heterogenous sources including git/svn, local, url, and specific cran versions

tidyverse/latest.Dockerfile

-FROM rocker/rstudio:3.6.3
-
-RUN apt-get update -qq && apt-get -y --no-install-recommends install \
-  libxml2-dev \
-  libcairo2-dev \
-  libsqlite-dev \
-  libmariadbd-dev \
-  libmariadbclient-dev \
-  libpq-dev \
-  libssh2-1-dev \
-  unixodbc-dev \
-  libsasl2-dev \
-  && install2.r --error \
-    --deps TRUE \
-    tidyverse \
-    dplyr \
-    devtools \
-    formatR \
-    remotes \
-    selectr \
-    caTools \
-    BiocManager
-

verse/devel.Dockerfile

-FROM rocker/tidyverse:devel
-
-# Version-stable CTAN repo from the tlnet archive at texlive.info, used in the
-# TinyTeX installation: chosen as the frozen snapshot of the TeXLive release
-# shipped for the base Debian image of a given rocker/r-ver tag.
-# Debian buster => TeXLive 2018, frozen release snapshot 2019/02/27
-ARG CTAN_REPO=${CTAN_REPO:-https://www.texlive.info/tlnet-archive/2019/02/27/tlnet}
-ENV CTAN_REPO=${CTAN_REPO}
-
-ENV PATH=$PATH:/opt/TinyTeX/bin/x86_64-linux/
-
-## Add LaTeX, rticles and bookdown support
-RUN wget "https://travis-bin.yihui.name/texlive-local.deb" \
-  && dpkg -i texlive-local.deb \
-  && rm texlive-local.deb \
-  && apt-get update \
-  && apt-get install -y --no-install-recommends \
-    ## for rJava
-    default-jdk \
-    ## Nice Google fonts
-    fonts-roboto \
-    ## used by some base R plots
-    ghostscript \
-    ## used to build rJava and other packages
-    libbz2-dev \
-    libicu-dev \
-    liblzma-dev \
-    ## system dependency of hunspell (devtools)
-    libhunspell-dev \
-    ## system dependency of hadley/pkgdown
-    libmagick++-dev \
-    ## rdf, for redland / linked data
-    librdf0-dev \
-    ## for V8-based javascript wrappers
-    libv8-dev \
-    ## R CMD Check wants qpdf to check pdf sizes, or throws a Warning
-    qpdf \
-    ## For building PDF manuals
-    texinfo \
-    ## for git via ssh key
-    ssh \
-    ## just because
-    less \
-    vim \
-    ## parallelization
-    libzmq3-dev \
-    libopenmpi-dev \
-  && apt-get clean \
-  && rm -rf /var/lib/apt/lists/ \
-  ## Use tinytex for LaTeX installation
-  && install2.r --error tinytex \
-  ## Admin-based install of TinyTeX:
-  && wget -qO- \
-    "https://github.com/yihui/tinytex/raw/master/tools/install-unx.sh" | \
-    sh -s - --admin --no-path \
-  && mv ~/.TinyTeX /opt/TinyTeX \
-  && if /opt/TinyTeX/bin/*/tex -v | grep -q 'TeX Live 2018'; then \
-      ## Patch the Perl modules in the frozen TeX Live 2018 snapshot with the newer
-      ## version available for the installer in tlnet/tlpkg/TeXLive, to include the
-      ## fix described in https://github.com/yihui/tinytex/issues/77#issuecomment-466584510
-      ## as discussed in https://www.preining.info/blog/2019/09/tex-services-at-texlive-info/#comments
-      wget -P /tmp/ ${CTAN_REPO}/install-tl-unx.tar.gz \
-      && tar -xzf /tmp/install-tl-unx.tar.gz -C /tmp/ \
-      && cp -Tr /tmp/install-tl-*/tlpkg/TeXLive /opt/TinyTeX/tlpkg/TeXLive \
-      && rm -r /tmp/install-tl-*; \
-    fi \
-  && /opt/TinyTeX/bin/*/tlmgr path add \
-  && tlmgr install ae inconsolata listings metafont mfware parskip pdfcrop tex \
-  && tlmgr path add \
-  && Rscript -e "tinytex::r_texmf()" \
-  && chown -R root:staff /opt/TinyTeX \
-  && chmod -R g+w /opt/TinyTeX \
-  && chmod -R g+wx /opt/TinyTeX/bin \
-  && echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron \
-  && install2.r --error PKI \
-  ## And some nice R packages for publishing-related stuff
-  && install2.r --error --deps TRUE \
-    bookdown rticles rmdshower rJava
-#
-## Consider including:
-# - yihui/printr R package (when released to CRAN)
-# - libgsl0-dev (GSL math library dependencies)

verse/latest.Dockerfile

-FROM rocker/tidyverse:3.6.3
-
-# Version-stable CTAN repo from the tlnet archive at texlive.info, used in the
-# TinyTeX installation: chosen as the frozen snapshot of the TeXLive release
-# shipped for the base Debian image of a given rocker/r-ver tag.
-# Debian buster => TeXLive 2018, frozen release snapshot 2019/02/27
-ARG CTAN_REPO=${CTAN_REPO:-https://www.texlive.info/tlnet-archive/2019/02/27/tlnet}
-ENV CTAN_REPO=${CTAN_REPO}
-
-ENV PATH=$PATH:/opt/TinyTeX/bin/x86_64-linux/
-
-## Add LaTeX, rticles and bookdown support
-RUN wget "https://travis-bin.yihui.name/texlive-local.deb" \
-  && dpkg -i texlive-local.deb \
-  && rm texlive-local.deb \
-  && apt-get update \
-  && apt-get install -y --no-install-recommends \
-    curl \
-    default-jdk \
-    fonts-roboto \
-    ghostscript \
-    less \
-    libbz2-dev \
-    libicu-dev \
-    liblzma-dev \
-    libhunspell-dev \
-    libjpeg-dev \
-    libmagick++-dev \
-    libopenmpi-dev \
-    librdf0-dev \
-    libtiff-dev \
-    libv8-dev \
-    libzmq3-dev \
-    qpdf \
-    ssh \
-    texinfo \
-    vim \
-  && apt-get clean \
-  && rm -rf /var/lib/apt/lists/ \
-  ## Use tinytex for LaTeX installation
-  && install2.r --error tinytex \
-  ## Admin-based install of TinyTeX:
-  && wget -qO- \
-    "https://github.com/yihui/tinytex/raw/master/tools/install-unx.sh" | \
-    sh -s - --admin --no-path \
-  && mv ~/.TinyTeX /opt/TinyTeX \
-  && if /opt/TinyTeX/bin/*/tex -v | grep -q 'TeX Live 2018'; then \
-      ## Patch the Perl modules in the frozen TeX Live 2018 snapshot with the newer
-      ## version available for the installer in tlnet/tlpkg/TeXLive, to include the
-      ## fix described in https://github.com/yihui/tinytex/issues/77#issuecomment-466584510
-      ## as discussed in https://www.preining.info/blog/2019/09/tex-services-at-texlive-info/#comments
-      wget -P /tmp/ ${CTAN_REPO}/install-tl-unx.tar.gz \
-      && tar -xzf /tmp/install-tl-unx.tar.gz -C /tmp/ \
-      && cp -Tr /tmp/install-tl-*/tlpkg/TeXLive /opt/TinyTeX/tlpkg/TeXLive \
-      && rm -r /tmp/install-tl-*; \
-    fi \
-  && /opt/TinyTeX/bin/*/tlmgr path add \
-  && tlmgr install ae inconsolata listings metafont mfware parskip pdfcrop tex \
-  && tlmgr path add \
-  && Rscript -e "tinytex::r_texmf()" \
-  && chown -R root:staff /opt/TinyTeX \
-  && chmod -R g+w /opt/TinyTeX \
-  && chmod -R g+wx /opt/TinyTeX/bin \
-  && echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron \
-  && install2.r --error PKI \
-  ## And some nice R packages for publishing-related stuff
-  && install2.r --error --deps TRUE \
-    bookdown rticles rmdshower rJava
-#
-## Consider including:
-# - yihui/printr R package (when released to CRAN)
-# - libgsl0-dev (GSL math library dependencies)