Skip to content
Snippets Groups Projects
Verified Commit 3e0cb4e0 authored by Olivier Benz's avatar Olivier Benz
Browse files

Freeze Python v3.12.1

parent bff4fced
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
VERSION_MATRIX.md
+ 1
− 1
View file @ 3e0cb4e0
......@@ -5,7 +5,7 @@ Topmost entry = Tag `latest`
| Python | Jupyter Hub | Jupyter Lab | code‑server (Code) | Git | Git LFS | Pandoc | CTAN date[^2] | Quarto[^2] | Linux distro |
|:-----------|:------------|:------------|:-------------------|:-------|:--------|:-------|:--------------|:------------|:-------------|
| 3.11.8 | 4.0.2 | 4.1.0 | 4.21.0 (1.86.0) | 2.43.0 | 3.4.1 | 3.1.11 | | 1.4.549 | Debian 12 |
| 3.12.1 | 4.0.2 | 4.1.0 | 4.21.0 (1.86.0) | 2.43.0 | 3.4.1 | 3.1.11 | | 1.4.549 | Debian 12 |
| 3.12.1 | 4.0.2 | 4.1.0 | 4.21.0 (1.86.0) | 2.43.0 | 3.4.1 | 3.1.11 | 2024‑02‑06 | 1.4.549 | Debian 12 |
| 3.11.7 | 4.0.2 | 4.1.0 | 4.21.0 (1.86.0) | 2.43.0 | 3.4.1 | 3.1.11 | 2024‑02‑06 | 1.4.549 | Debian 12 |
| 3.12.0[^1] | 4.0.2 | 4.0.9 | 4.19.1 (1.84.2) | 2.43.0 | 3.4.0 | 3.1.1 | 2023‑12‑08 | 1.3.450 | Debian 12 |
| 3.11.6 | 4.0.2 | 4.0.9 | 4.19.1 (1.84.2) | 2.43.0 | 3.4.0 | 3.1.1 | 2023‑12‑04 | 1.3.450 | Debian 12 |
......
base/.gitlab-ci.yml
+ 2
− 2
View file @ 3e0cb4e0
.env:
variables:
PYTHON_VERSION: "3.11.8"
TAG_VERSION_MAJ_MIN: "true"
PYTHON_VERSION: "3.12.1"
TAG_VERSION_MAJ_MIN: "false"
TAG_VERSION_MAJ: "false"
.before-script-build: &before-script-build
......
base/3.12.1.Dockerfile 0 → 100644
+ 288
− 0
View file @ 3e0cb4e0
ARG BASE_IMAGE=debian
ARG BASE_IMAGE_TAG=12
ARG BUILD_ON_IMAGE=glcr.b-data.ch/python/ver
ARG PYTHON_VERSION=3.12.1
ARG CUDA_IMAGE_FLAVOR
ARG NB_USER=jovyan
ARG NB_UID=1000
ARG JUPYTERHUB_VERSION=4.0.2
ARG JUPYTERLAB_VERSION=4.1.0
ARG CODE_BUILTIN_EXTENSIONS_DIR=/opt/code-server/lib/vscode/extensions
ARG CODE_SERVER_VERSION=4.21.0
ARG GIT_VERSION=2.43.0
ARG GIT_LFS_VERSION=3.4.1
ARG PANDOC_VERSION=3.1.11
FROM ${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION}${CUDA_IMAGE_FLAVOR:+-}${CUDA_IMAGE_FLAVOR} AS files
ARG NB_UID
ENV NB_GID=100
RUN mkdir /files
COPY assets /files
COPY conf/ipython /files
COPY conf/jupyter /files
COPY conf/jupyterlab /files
COPY conf/shell /files
COPY conf/user /files
COPY scripts /files
RUN cp -a /files/etc/skel/. /files/var/backups/skel \
&& chown -R ${NB_UID}:${NB_GID} /files/var/backups/skel \
## Ensure file modes are correct when using CI
## Otherwise set to 777 in the target image
&& find /files -type d -exec chmod 755 {} \; \
&& find /files -type f -exec chmod 644 {} \; \
&& find /files/usr/local/bin -type f -exec chmod 755 {} \; \
&& find /files/etc/profile.d -type f -exec chmod 755 {} \;
FROM glcr.b-data.ch/git/gsi/${GIT_VERSION}/${BASE_IMAGE}:${BASE_IMAGE_TAG} AS gsi
FROM glcr.b-data.ch/git-lfs/glfsi:${GIT_LFS_VERSION} AS glfsi
FROM ${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION}${CUDA_IMAGE_FLAVOR:+-}${CUDA_IMAGE_FLAVOR}
LABEL org.opencontainers.image.licenses="MIT" \
org.opencontainers.image.source="https://gitlab.b-data.ch/jupyterlab/python/docker-stack" \
org.opencontainers.image.vendor="b-data GmbH" \
org.opencontainers.image.authors="Olivier Benz <olivier.benz@b-data.ch>"
ARG DEBIAN_FRONTEND=noninteractive
ARG BUILD_ON_IMAGE
ARG CUDA_IMAGE_FLAVOR
ARG NB_USER
ARG NB_UID
ARG JUPYTERHUB_VERSION
ARG JUPYTERLAB_VERSION
ARG CODE_BUILTIN_EXTENSIONS_DIR
ARG CODE_SERVER_VERSION
ARG GIT_VERSION
ARG GIT_LFS_VERSION
ARG PANDOC_VERSION
ARG BUILD_START
ARG CODE_WORKDIR
ENV PARENT_IMAGE=${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION}${CUDA_IMAGE_FLAVOR:+-}${CUDA_IMAGE_FLAVOR} \
NB_USER=${NB_USER} \
NB_UID=${NB_UID} \
JUPYTERHUB_VERSION=${JUPYTERHUB_VERSION} \
JUPYTERLAB_VERSION=${JUPYTERLAB_VERSION} \
CODE_SERVER_VERSION=${CODE_SERVER_VERSION} \
GIT_VERSION=${GIT_VERSION} \
GIT_LFS_VERSION=${GIT_LFS_VERSION} \
PANDOC_VERSION=${PANDOC_VERSION} \
BUILD_DATE=${BUILD_START}
ENV NB_GID=100
## Install Git
COPY --from=gsi /usr/local /usr/local
## Install Git LFS
COPY --from=glfsi /usr/local /usr/local
USER root
RUN dpkgArch="$(dpkg --print-architecture)" \
## Unminimise if the system has been minimised
&& if [ $(command -v unminimize) ]; then \
yes | unminimize; \
fi \
&& apt-get update \
&& apt-get -y install --no-install-recommends \
bash-completion \
build-essential \
curl \
file \
fontconfig \
g++ \
gcc \
gfortran \
gnupg \
htop \
info \
jq \
libclang-dev \
man-db \
nano \
ncdu \
procps \
psmisc \
screen \
sudo \
swig \
tmux \
vim-tiny \
wget \
zsh \
## Git: Additional runtime dependencies
libcurl3-gnutls \
liberror-perl \
## Git: Additional runtime recommendations
less \
ssh-client \
## Python: Additional dev dependencies
&& if [ -z "$PYTHON_VERSION" ]; then \
apt-get -y install --no-install-recommends \
python3-dev \
## Install Python package installer
## (dep: python3-distutils, python3-setuptools and python3-wheel)
python3-pip \
## Install venv module for python3
python3-venv; \
## make some useful symlinks that are expected to exist
## ("/usr/bin/python" and friends)
for src in pydoc3 python3 python3-config; do \
dst="$(echo "$src" | tr -d 3)"; \
if [ -s "/usr/bin/$src" ] && [ ! -e "/usr/bin/$dst" ]; then \
ln -svT "$src" "/usr/bin/$dst"; \
fi \
done; \
else \
## Force update pip, setuptools and wheel
curl -sLO https://bootstrap.pypa.io/get-pip.py; \
python get-pip.py \
pip \
setuptools \
wheel; \
rm get-pip.py; \
fi \
## Install font MesloLGS NF
&& mkdir -p /usr/share/fonts/truetype/meslo \
&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Regular.ttf -o /usr/share/fonts/truetype/meslo/MesloLGS\ NF\ Regular.ttf \
&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Bold.ttf -o /usr/share/fonts/truetype/meslo/MesloLGS\ NF\ Bold.ttf \
&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Italic.ttf -o /usr/share/fonts/truetype/meslo/MesloLGS\ NF\ Italic.ttf \
&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Bold%20Italic.ttf -o /usr/share/fonts/truetype/meslo/MesloLGS\ NF\ Bold\ Italic.ttf \
&& fc-cache -fsv \
## Git: Set default branch name to main
&& git config --system init.defaultBranch main \
## Git: Store passwords for one hour in memory
&& git config --system credential.helper "cache --timeout=3600" \
## Git: Merge the default branch from the default remote when "git pull" is run
&& git config --system pull.rebase false \
## Install pandoc
&& curl -sLO https://github.com/jgm/pandoc/releases/download/${PANDOC_VERSION}/pandoc-${PANDOC_VERSION}-1-${dpkgArch}.deb \
&& dpkg -i pandoc-${PANDOC_VERSION}-1-${dpkgArch}.deb \
&& rm pandoc-${PANDOC_VERSION}-1-${dpkgArch}.deb \
## Delete potential user with UID 1000
&& if $(grep -q 1000 /etc/passwd); then \
userdel $(id -un 1000); \
fi \
## Do not set user limits for sudo/sudo-i
&& sed -i 's/.*pam_limits.so/#&/g' /etc/pam.d/sudo \
&& if [ -f "/etc/pam.d/sudo-i" ]; then \
sed -i 's/.*pam_limits.so/#&/g' /etc/pam.d/sudo-i; \
fi \
## Add user
&& useradd -l -m -s $(which zsh) -N -u ${NB_UID} ${NB_USER} \
&& mkdir -p /var/backups/skel \
&& chown ${NB_UID}:${NB_GID} /var/backups/skel \
## Install Tini
&& curl -sL https://github.com/krallin/tini/releases/download/v0.19.0/tini-${dpkgArch} -o /usr/local/bin/tini \
&& chmod +x /usr/local/bin/tini \
## Clean up
&& rm -rf /tmp/* \
&& rm -rf /var/lib/apt/lists/* \
${HOME}/.cache
ENV PATH=/opt/code-server/bin:$PATH \
CS_DISABLE_GETTING_STARTED_OVERRIDE=1
## Install code-server
RUN mkdir /opt/code-server \
&& cd /opt/code-server \
&& curl -sL https://github.com/coder/code-server/releases/download/v${CODE_SERVER_VERSION}/code-server-${CODE_SERVER_VERSION}-linux-$(dpkg --print-architecture).tar.gz | tar zxf - --no-same-owner --strip-components=1 \
&& curl -sL https://upload.wikimedia.org/wikipedia/commons/9/9a/Visual_Studio_Code_1.35_icon.svg -o vscode.svg \
## Include custom fonts
&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS-NF-Regular.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS-NF-Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS-NF-Bold.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS-NF-Bold-Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
&& sed -i 's|</head>| <link rel="stylesheet" type="text/css" href="{{BASE}}/_static/src/browser/media/css/fonts.css">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
## Install code-server extensions
&& cd /tmp \
&& curl -sLO https://dl.b-data.ch/vsix/alefragnani.project-manager-12.7.0.vsix \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension alefragnani.project-manager-12.7.0.vsix \
&& curl -sLO https://dl.b-data.ch/vsix/piotrpalarz.vscode-gitignore-generator-1.0.3.vsix \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension piotrpalarz.vscode-gitignore-generator-1.0.3.vsix \
&& curl -sLO https://dl.b-data.ch/vsix/mutantdino.resourcemonitor-1.0.7.vsix \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension mutantdino.resourcemonitor-1.0.7.vsix \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension GitHub.vscode-pull-request-github \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension GitLab.gitlab-workflow \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension ms-python.python \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension ms-toolsai.jupyter \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension christian-kohler.path-intellisense \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension eamodio.gitlens@11.7.0 \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension mhutchie.git-graph \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension redhat.vscode-yaml \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension grapecity.gc-excelviewer \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension editorconfig.editorconfig \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension DavidAnson.vscode-markdownlint \
## Create folders temp and tmp for Jupyter extension
&& cd /opt/code-server/lib/vscode/extensions/ms-toolsai.jupyter-* \
&& mkdir -m 1777 temp \
&& mkdir -m 1777 tmp \
## Clean up
&& rm -rf /tmp/* \
${HOME}/.config \
${HOME}/.local
## Install JupyterLab
RUN export PIP_BREAK_SYSTEM_PACKAGES=1 \
&& pip install \
jupyter-server-proxy \
jupyterhub==${JUPYTERHUB_VERSION} \
jupyterlab==${JUPYTERLAB_VERSION} \
jupyterlab-git \
jupyterlab-lsp \
notebook \
nbclassic \
nbconvert \
python-lsp-server[all] \
## Include custom fonts
&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS-NF-Regular.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS-NF-Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS-NF-Bold.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS-NF-Bold-Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
&& sed -i 's|</head>|<link rel="stylesheet" type="text/css" href="{{page_config.fullStaticUrl}}/assets/css/fonts.css"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
## Clean up
&& rm -rf /tmp/* \
${HOME}/.cache
## Switch back to ${NB_USER} to avoid accidental container runs as root
USER ${NB_USER}
ENV HOME=/home/${NB_USER} \
CODE_WORKDIR=${CODE_WORKDIR:-/home/${NB_USER}/projects} \
SHELL=/usr/bin/zsh \
TERM=xterm-256color
WORKDIR ${HOME}
## Install Oh My Zsh with Powerlevel10k theme
RUN sh -c "$(curl -fsSL https://raw.githubusercontent.com/ohmyzsh/ohmyzsh/master/tools/install.sh)" "" --unattended \
&& git clone --depth=1 https://github.com/romkatv/powerlevel10k.git ${HOME}/.oh-my-zsh/custom/themes/powerlevel10k \
&& sed -i 's/ZSH="\/home\/jovyan\/.oh-my-zsh"/ZSH="$HOME\/.oh-my-zsh"/g' ${HOME}/.zshrc \
&& sed -i 's/ZSH_THEME="robbyrussell"/ZSH_THEME="powerlevel10k\/powerlevel10k"/g' ${HOME}/.zshrc \
&& echo "\n# set PATH so it includes user's private bin if it exists\nif [ -d \"\$HOME/bin\" ] && [[ \"\$PATH\" != *\"\$HOME/bin\"* ]] ; then\n PATH=\"\$HOME/bin:\$PATH\"\nfi" | tee -a ${HOME}/.bashrc ${HOME}/.zshrc \
&& echo "\n# set PATH so it includes user's private bin if it exists\nif [ -d \"\$HOME/.local/bin\" ] && [[ \"\$PATH\" != *\"\$HOME/.local/bin\"* ]] ; then\n PATH=\"\$HOME/.local/bin:\$PATH\"\nfi" | tee -a ${HOME}/.bashrc ${HOME}/.zshrc \
&& echo "\n# Update last-activity timestamps while in screen/tmux session\nif [ ! -z \"\$TMUX\" -o ! -z \"\$STY\" ] ; then\n busy &\nfi" >> ${HOME}/.bashrc \
&& echo "\n# Update last-activity timestamps while in screen/tmux session\nif [ ! -z \"\$TMUX\" -o ! -z \"\$STY\" ] ; then\n setopt nocheckjobs\n busy &\nfi" >> ${HOME}/.zshrc \
&& echo "\n# To customize prompt, run \`p10k configure\` or edit ~/.p10k.zsh." >> ${HOME}/.zshrc \
&& echo "[[ ! -f ~/.p10k.zsh ]] || source ~/.p10k.zsh" >> ${HOME}/.zshrc \
## Create user's private bin
&& mkdir -p ${HOME}/.local/bin \
## Create backup of home directory
&& cp -a ${HOME}/. /var/backups/skel
## Copy files as late as possible to avoid cache busting
COPY --from=files /files /
COPY --from=files /files/var/backups/skel ${HOME}
EXPOSE 8888
## Configure container startup
ENTRYPOINT ["tini", "-g", "--", "start.sh"]
CMD ["start-notebook.sh"]
common/subtags/devtools/3.12.1.Dockerfile 0 → 100644
+ 88
− 0
View file @ 3e0cb4e0
ARG BASE_IMAGE=debian
ARG BASE_IMAGE_TAG=12
ARG BUILD_ON_IMAGE
ARG PYTHON_VERSION=3.12.1
ARG NODE_VERSION=18.19.0
ARG CODE_BUILTIN_EXTENSIONS_DIR=/opt/code-server/lib/vscode/extensions
FROM glcr.b-data.ch/nodejs/nsi/${NODE_VERSION}/${BASE_IMAGE}:${BASE_IMAGE_TAG} as nsi
FROM ${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION}
ARG DEBIAN_FRONTEND=noninteractive
ARG BUILD_ON_IMAGE
ARG NODE_VERSION
ARG CODE_BUILTIN_EXTENSIONS_DIR
ARG BUILD_START
ENV PARENT_IMAGE=${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION} \
NODE_VERSION=${NODE_VERSION} \
BUILD_DATE=${BUILD_START}
## Install Node.js
COPY --from=nsi /usr/local /usr/local
USER root
ENV HOME=/root
WORKDIR ${HOME}
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
bats \
libkrb5-dev \
libsecret-1-dev \
libx11-dev \
libxkbfile-dev \
libxt6 \
quilt \
rsync \
&& if [ -n "$PYTHON_VERSION" ]; then \
## make some useful symlinks that are expected to exist
## ("/usr/bin/python" and friends)
for src in pydoc3 python3 python3-config; do \
dst="$(echo "$src" | tr -d 3)"; \
if [ -s "/usr/bin/$src" ] && [ ! -e "/usr/bin/$dst" ]; then \
ln -svT "$src" "/usr/bin/$dst"; \
fi \
done; \
fi \
## Clean up Node.js installation
&& bash -c 'rm -f /usr/local/bin/{docker-entrypoint.sh,yarn*}' \
&& bash -c 'mv /usr/local/{CHANGELOG.md,LICENSE,README.md} \
/usr/local/share/doc/node' \
## Enable corepack (Yarn, pnpm)
&& corepack enable \
## Install nFPM
&& echo 'deb [trusted=yes] https://repo.goreleaser.com/apt/ /' \
| tee /etc/apt/sources.list.d/goreleaser.list \
&& apt-get update \
&& apt-get install -y --no-install-recommends nfpm \
## Install code-server extensions
&& code-server --extensions-dir "$CODE_BUILTIN_EXTENSIONS_DIR" \
--install-extension dbaeumer.vscode-eslint \
&& code-server --extensions-dir "$CODE_BUILTIN_EXTENSIONS_DIR" \
--install-extension esbenp.prettier-vscode \
&& code-server --extensions-dir "$CODE_BUILTIN_EXTENSIONS_DIR" \
--install-extension ms-python.black-formatter \
&& code-server --extensions-dir "$CODE_BUILTIN_EXTENSIONS_DIR" \
--install-extension timonwong.shellcheck \
## Enable shellcheck system-wide
&& ln -sf "$CODE_BUILTIN_EXTENSIONS_DIR"/timonwong.shellcheck-*/binaries/*/*/shellcheck \
/usr/local/bin/shellcheck \
## Clean up
&& rm -rf /tmp/* \
&& rm -rf /var/lib/apt/lists/* \
"$HOME/.config" \
"$HOME/.local"
## Switch back to ${NB_USER} to avoid accidental container runs as root
USER ${NB_USER}
ENV HOME=/home/${NB_USER}
WORKDIR ${HOME}
scipy/.gitlab-ci.yml
+ 2
− 2
View file @ 3e0cb4e0
.env:
variables:
PYTHON_VERSION: "3.11.8"
TAG_VERSION_MAJ_MIN: "true"
PYTHON_VERSION: "3.12.1"
TAG_VERSION_MAJ_MIN: "false"
TAG_VERSION_MAJ: "false"
.before-script-build: &before-script-build
......
scipy/3.12.1.Dockerfile 0 → 100644
+ 147
− 0
View file @ 3e0cb4e0
ARG BUILD_ON_IMAGE=glcr.b-data.ch/jupyterlab/python/base
ARG PYTHON_VERSION=3.12.1
ARG CODE_BUILTIN_EXTENSIONS_DIR=/opt/code-server/lib/vscode/extensions
ARG QUARTO_VERSION=1.4.549
ARG CTAN_REPO=https://www.texlive.info/tlnet-archive/2024/02/06/tlnet
FROM ${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION}
ARG DEBIAN_FRONTEND=noninteractive
ARG BUILD_ON_IMAGE
ARG CODE_BUILTIN_EXTENSIONS_DIR
ARG QUARTO_VERSION
ARG CTAN_REPO
ARG BUILD_START
USER root
ENV PARENT_IMAGE=${BUILD_ON_IMAGE}${PYTHON_VERSION:+:$PYTHON_VERSION} \
QUARTO_VERSION=${QUARTO_VERSION} \
CTAN_REPO=${CTAN_REPO} \
BUILD_DATE=${BUILD_START}
ENV HOME=/root \
PATH=/opt/TinyTeX/bin/linux:/opt/quarto/bin:$PATH
WORKDIR ${HOME}
RUN dpkgArch="$(dpkg --print-architecture)" \
&& apt-get update \
&& apt-get install -y --no-install-recommends \
fonts-roboto \
ghostscript \
librsvg2-bin \
qpdf \
texinfo \
## For h5py wheels
libhdf5-dev \
## Install quarto
&& curl -sLO https://github.com/quarto-dev/quarto-cli/releases/download/v${QUARTO_VERSION}/quarto-${QUARTO_VERSION}-linux-${dpkgArch}.tar.gz \
&& mkdir -p /opt/quarto \
&& tar -xzf quarto-${QUARTO_VERSION}-linux-${dpkgArch}.tar.gz -C /opt/quarto --no-same-owner --strip-components=1 \
&& rm quarto-${QUARTO_VERSION}-linux-${dpkgArch}.tar.gz \
## Remove quarto pandoc
&& rm /opt/quarto/bin/tools/$(uname -m)/pandoc \
## Link to system pandoc
&& ln -s /usr/bin/pandoc /opt/quarto/bin/tools/$(uname -m)/pandoc \
## Tell APT about the TeX Live installation
## by building a dummy package using equivs
&& apt-get install -y --no-install-recommends equivs \
&& cd /tmp \
&& wget https://github.com/scottkosty/install-tl-ubuntu/raw/master/debian-control-texlive-in.txt \
&& equivs-build debian-* \
&& mv texlive-local*.deb texlive-local.deb \
&& dpkg -i texlive-local.deb \
&& apt-get -y purge equivs \
&& apt-get -y autoremove \
## Admin-based install of TinyTeX
&& wget -qO- "https://yihui.org/tinytex/install-unx.sh" \
| sh -s - --admin --no-path \
&& mv ${HOME}/.TinyTeX /opt/TinyTeX \
&& sed -i "s|${HOME}/.TinyTeX|/opt/TinyTeX|g" \
/opt/TinyTeX/texmf-var/fonts/conf/texlive-fontconfig.conf \
&& ln -rs /opt/TinyTeX/bin/$(uname -m)-linux \
/opt/TinyTeX/bin/linux \
&& /opt/TinyTeX/bin/linux/tlmgr path add \
&& tlmgr update --self \
## TeX packages as requested by the community
&& curl -sSLO https://yihui.org/gh/tinytex/tools/pkgs-yihui.txt \
&& tlmgr install $(cat pkgs-yihui.txt | tr '\n' ' ') \
&& rm -f pkgs-yihui.txt \
## TeX packages as in rocker/verse
&& tlmgr install \
context \
pdfcrop \
## TeX packages as in jupyter/scipy-notebook
&& tlmgr install \
cm-super \
dvipng \
## TeX packages specific for nbconvert
&& tlmgr install \
oberdiek \
titling \
&& tlmgr path add \
&& chown -R root:${NB_GID} /opt/TinyTeX \
&& chmod -R g+w /opt/TinyTeX \
&& chmod -R g+wx /opt/TinyTeX/bin \
## Make the TeX Live fonts available as system fonts
&& cp /opt/TinyTeX/texmf-var/fonts/conf/texlive-fontconfig.conf \
/etc/fonts/conf.d/09-texlive.conf \
&& fc-cache -fsv \
## Install Python packages
&& export PIP_BREAK_SYSTEM_PACKAGES=1 \
&& pip install \
altair \
beautifulsoup4 \
bokeh \
bottleneck \
cloudpickle \
cython \
dask \
dill \
h5py \
ipympl\
ipywidgets \
matplotlib \
numba \
numexpr \
numpy \
pandas \
patsy \
protobuf \
scikit-image \
scikit-learn \
scipy \
seaborn \
sqlalchemy \
statsmodels \
sympy \
tables \
widgetsnbextension \
xlrd \
## Install facets
&& cd /tmp \
&& git clone https://github.com/PAIR-code/facets.git \
&& jupyter nbclassic-extension install facets/facets-dist/ --sys-prefix \
&& cd / \
## Install code-server extensions
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension quarto.quarto \
&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension James-Yu.latex-workshop \
## Update default PATH settings in /etc/profile.d/00-reset-path.sh
&& sed -i 's|/opt/code-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin|/opt/TinyTeX/bin/linux:/opt/quarto/bin:/opt/code-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin|g' /etc/profile.d/00-reset-path.sh \
&& sed -i 's|/opt/code-server/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games|/opt/TinyTeX/bin/linux:/opt/quarto/bin:/opt/code-server/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games|g' /etc/profile.d/00-reset-path.sh \
## Clean up
&& rm -rf /tmp/* \
&& rm -rf /var/lib/apt/lists/* \
${HOME}/.cache \
${HOME}/.config \
${HOME}/.local \
${HOME}/.wget-hsts
## Switch back to ${NB_USER} to avoid accidental container runs as root
USER ${NB_USER}
ENV HOME=/home/${NB_USER}
WORKDIR ${HOME}
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment