Update JupyterLab to version 3.1.18

- r-ver: Update extension R to version 2.3.1

r-ver/init.sh

@@ -31,10 +31,5 @@ else
       .local/share/code-server/User/settings.json
 fi
 
-# Change file mode of .p10k.zsh.sample
-if [ -e .p10k.zsh.sample ] ; then
-    chmod 644 .p10k.zsh.sample
-fi
-
 # Remove old .zcompdump files
 rm -f .zcompdump*

r-ver/latest.Dockerfile

@@ -16,7 +16,7 @@ ARG NB_USER=jovyan
 ARG NB_UID=1000
 ARG NB_GID=100
 ARG JUPYTERHUB_VERSION=1.4.2
-ARG JUPYTERLAB_VERSION=3.1.14
+ARG JUPYTERLAB_VERSION=3.1.18
 ARG CODE_SERVER_RELEASE=3.12.0
 ARG GIT_VERSION=2.33.0
 ARG PANDOC_VERSION=2.14.2
@@ -138,17 +138,16 @@ RUN dpkgArch="$(dpkg --print-architecture)" \
   && echo '{\n  "@jupyterlab/apputils-extension:themes": {\n    "theme": "JupyterLab Dark"\n  }\n}' > /usr/local/share/jupyter/lab/settings/overrides.json \
   ## Install code-server extensions
   && cd /tmp \
-  && curl -sLO https://dl.b-data.ch/vsix/alefragnani.project-manager-12.4.0.vsix \
-  && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension alefragnani.project-manager-12.4.0.vsix \
   && curl -sLO https://dl.b-data.ch/vsix/piotrpalarz.vscode-gitignore-generator-1.0.3.vsix \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension piotrpalarz.vscode-gitignore-generator-1.0.3.vsix \
+  && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension alefragnani.project-manager \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension GitLab.gitlab-workflow \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension ms-python.python \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension christian-kohler.path-intellisense \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension eamodio.gitlens \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension redhat.vscode-yaml \
   && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension grapecity.gc-excelviewer \
-  && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension Ikuyadeu.r@2.3.0 \
+  && code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension Ikuyadeu.r@2.3.1 \
   && mkdir -p /usr/local/bin/start-notebook.d \
   && mkdir -p /usr/local/bin/before-notebook.d \
   && cd / \

r-ver/start.sh

@@ -55,7 +55,7 @@ if [ "$(id -u)" == 0 ] ; then
         if [[ ! -e "/home/${NB_USER}" ]]; then
             echo "Copying home dir to /home/${NB_USER}"
             mkdir "/home/${NB_USER}"
-            cp -R /home/jovyan "/home/${NB_USER}" || ln -s /home/jovyan "/home/${NB_USER}"
+            cp -a /home/jovyan/. "/home/${NB_USER}/" || ln -s /home/jovyan "/home/${NB_USER}"
         fi
         # if workdir is in /home/jovyan, cd to /home/${NB_USER}
         if [[ "${PWD}/" == "/home/jovyan/"* ]]; then