From 81ab88e4c9dbc15221cd58bb1d3539c406049b67 Mon Sep 17 00:00:00 2001
From: Olivier Benz <olivier.benz@b-data.ch>
Date: Fri, 1 Nov 2024 15:57:05 +0100
Subject: [PATCH] Update R to v4.4.2
---
CUDA.md | 2 +-
CUDA_VERSION_MATRIX.md | 1 +
README.md | 2 +-
VERSION_MATRIX.md | 3 +++
base/.gitlab-ci.yml | 2 +-
base/latest.Dockerfile | 2 +-
geospatial/.gitlab-ci.yml | 2 +-
qgisprocess/.gitlab-ci.yml | 2 +-
tidyverse/.gitlab-ci.yml | 2 +-
verse/.gitlab-ci.yml | 2 +-
10 files changed, 12 insertions(+), 8 deletions(-)
diff --git a/CUDA.md b/CUDA.md
index 4f16e67..7eb5809 100644
--- a/CUDA.md
+++ b/CUDA.md
@@ -88,7 +88,7 @@ cd base && docker build \
--build-arg BASE_IMAGE=ubuntu \
--build-arg BASE_IMAGE_TAG=22.04 \
--build-arg BUILD_ON_IMAGE=glcr.b-data.ch/cuda/r/ver \
- --build-arg R_VERSION=4.4.1 \
+ --build-arg R_VERSION=4.4.2 \
--build-arg CUDA_IMAGE_FLAVOR=devel \
-t jupyterlab/cuda/r/base \
-f latest.Dockerfile .
diff --git a/CUDA_VERSION_MATRIX.md b/CUDA_VERSION_MATRIX.md
index 7b40fd0..e93f2cb 100644
--- a/CUDA_VERSION_MATRIX.md
+++ b/CUDA_VERSION_MATRIX.md
@@ -6,6 +6,7 @@ Topmost entry = Tag `latest`
| R | Python | SAGA[^1] | CUDA | cuBLAS | cuDNN | NCCL | TensorRT[^2] | Linux distro |
|:------|:--------|:---------|:-------|:----------|:----------|:-------|:------------------------|:-------------|
+| 4.4.2 | 3.12.7 | 7.3.0 | 12.6.2 | 12.6.3.3 | 8.9.7.29 | 2.23.4 | 10.6.0.26/<br>10.3.0.26 | Ubuntu 22.04 |
| 4.4.1 | 3.12.7 | 7.3.0 | 12.6.2 | 12.6.3.3 | 8.9.7.29 | 2.23.4 | 10.6.0.26/<br>10.3.0.26 | Ubuntu 22.04 |
| 4.4.0 | 3.12.4 | 7.3.0 | 12.5.0 | 12.5.2.13 | 8.9.7.29 | 2.21.5 | 10.0.1.6 | Ubuntu 22.04 |
| 4.3.3 | 3.11.9 | 7.3.0 | 11.8.0 | 11.11.3.6 | 8.9.6.50 | 2.15.5 | 8.5.3[^3] | Ubuntu 22.04 |
diff --git a/README.md b/README.md
index 14320c4..4911192 100644
--- a/README.md
+++ b/README.md
@@ -154,7 +154,7 @@ To install docker, follow the instructions for your platform:
```bash
cd base && docker build \
- --build-arg R_VERSION=4.4.1 \
+ --build-arg R_VERSION=4.4.2 \
-t jupyterlab/r/base \
-f latest.Dockerfile .
```
diff --git a/VERSION_MATRIX.md b/VERSION_MATRIX.md
index 6fc6386..1f527a9 100644
--- a/VERSION_MATRIX.md
+++ b/VERSION_MATRIX.md
@@ -8,6 +8,7 @@ Topmost entry = Tag `latest`
| R | Python | Jupyter Hub | Jupyter Lab | code‑server (Code) | RStudio | Neovim | Git | Git LFS | Pandoc | CRAN date | Linux distro |
|:------|:--------|:------------|:------------|:-------------------|:--------------|:-------|:-------|:--------|:-------|:-----------|:-------------|
+| 4.4.2 | 3.12.7 | 5.2.1 | 4.3.0 | 4.93.1 (1.93.1) | 2024.09.0+375 | 0.10.2 | 2.47.0 | 3.5.1 | 3.2 | | Debian 12 |
| 4.4.1 | 3.12.7 | 5.2.1 | 4.3.0 | 4.93.1 (1.93.1) | 2024.09.0+375 | 0.10.2 | 2.47.0 | 3.5.1 | 3.2 | 2024‑10‑31 | Debian 12 |
| 4.4.0 | 3.12.4 | 5.0.0 | 4.2.2 | 4.90.0 (1.90.0) | 2024.04.2+764 | n/a | 2.45.2 | 3.5.1 | 3.1.11 | 2024‑06‑14 | Debian 12 |
| 4.3.3 | 3.11.9 | 4.1.5 | 4.1.6 | 4.23.0 (1.88.0) | n/a | n/a | 2.44.0 | 3.5.1 | 3.1.11 | 2024‑04‑24 | Debian 12 |
@@ -23,6 +24,7 @@ Topmost entry = Tag `latest`
| R | CTANÂ date | Quarto |
|:------|:-----------|:------------|
+| 4.4.2 | | 1.5.57 |
| 4.4.1 | 2024‑10‑31 | 1.5.57 |
| 4.4.0 | 2024‑06‑14 | 1.4.555 |
| 4.3.3 | 2024‑04‑24 | 1.4.553 |
@@ -38,6 +40,7 @@ Topmost entry = Tag `latest`
| R | QGIS | SAGA | OTB[^1] |
|:------|:-------|:------|:--------|
+| 4.4.2 | 3.40.0 | 9.1.3 | 9.1.0 |
| 4.4.1 | 3.40.0 | 9.1.3 | 9.1.0 |
| 4.4.0 | 3.36.3 | 9.1.3 | 9.0.0 |
| 4.3.3 | 3.36.2 | 9.1.3 | 9.0.0 |
diff --git a/base/.gitlab-ci.yml b/base/.gitlab-ci.yml
index a17e7fa..e59ab5e 100644
--- a/base/.gitlab-ci.yml
+++ b/base/.gitlab-ci.yml
@@ -1,6 +1,6 @@
.env:
variables:
- R_VERSION: "4.4.1"
+ R_VERSION: "4.4.2"
TAG_VERSION_MAJ_MIN: "false"
TAG_VERSION_MAJ: "false"
diff --git a/base/latest.Dockerfile b/base/latest.Dockerfile
index f21c4a6..3f98cfe 100644
--- a/base/latest.Dockerfile
+++ b/base/latest.Dockerfile
@@ -7,7 +7,7 @@ ARG CUDA_IMAGE_FLAVOR
ARG NB_USER=jovyan
ARG NB_UID=1000
ARG JUPYTERHUB_VERSION=5.2.1
-ARG JUPYTERLAB_VERSION=4.2.5
+ARG JUPYTERLAB_VERSION=4.3.0
ARG CODE_BUILTIN_EXTENSIONS_DIR=/opt/code-server/lib/vscode/extensions
ARG CODE_SERVER_VERSION=4.93.1
ARG RSTUDIO_VERSION=2024.09.0+375
diff --git a/geospatial/.gitlab-ci.yml b/geospatial/.gitlab-ci.yml
index 2729cfd..e3a2aa3 100644
--- a/geospatial/.gitlab-ci.yml
+++ b/geospatial/.gitlab-ci.yml
@@ -1,6 +1,6 @@
.env:
variables:
- R_VERSION: "4.4.1"
+ R_VERSION: "4.4.2"
TAG_VERSION_MAJ_MIN: "false"
TAG_VERSION_MAJ: "false"
diff --git a/qgisprocess/.gitlab-ci.yml b/qgisprocess/.gitlab-ci.yml
index 3bb7ca3..ed22804 100644
--- a/qgisprocess/.gitlab-ci.yml
+++ b/qgisprocess/.gitlab-ci.yml
@@ -1,6 +1,6 @@
.env:
variables:
- R_VERSION: "4.4.1"
+ R_VERSION: "4.4.2"
QGIS_VERSION: "3.40.0"
OTB_VERSION: "9.1.0"
TAG_VERSION_MAJ_MIN: "false"
diff --git a/tidyverse/.gitlab-ci.yml b/tidyverse/.gitlab-ci.yml
index a22c34a..d4c0534 100644
--- a/tidyverse/.gitlab-ci.yml
+++ b/tidyverse/.gitlab-ci.yml
@@ -1,6 +1,6 @@
.env:
variables:
- R_VERSION: "4.4.1"
+ R_VERSION: "4.4.2"
TAG_VERSION_MAJ_MIN: "false"
TAG_VERSION_MAJ: "false"
diff --git a/verse/.gitlab-ci.yml b/verse/.gitlab-ci.yml
index 2385b99..aa66858 100644
--- a/verse/.gitlab-ci.yml
+++ b/verse/.gitlab-ci.yml
@@ -1,6 +1,6 @@
.env:
variables:
- R_VERSION: "4.4.1"
+ R_VERSION: "4.4.2"
CTAN_REPO_BUILD_LATEST: "https://mirror.init7.net/ctan/systems/texlive/tlnet"
TAG_VERSION_MAJ_MIN: "false"
TAG_VERSION_MAJ: "false"
--
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